Malmstrom, Rex R.: search on Z-Library

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1

Niche differentiation is spatially and temporally regulated in the rhizosphere

Nuccio, Erin E., Starr, Evan, Karaoz, Ulas, Brodie, Eoin L., Zhou, Jizhong, Tringe, Susannah G., Malmstrom, Rex R., Woyke, Tanja, Banfield, Jillian F., Firestone, Mary K., Pett-Ridge, Jennifer

Journal:

The ISME Journal

Year:

2020

Language:

english

File:

PDF, 1.97 MB

english, 2020

2

Ecological and genomic analyses of candidate phylum WPS â2 bacteria in an unvegetated soil

Sheremet, Andriy, Jones, Gareth M., Jarett, Jessica, Bowers, Robert M., Bedard, Isaac, Culham, Cassandra, EloeâFadrosh, Emiley A., Ivanova, Natalia, Malmstrom, Rex R., Grasby, Stephen E., Woyke, Tan

Journal:

Environmental Microbiology

Year:

2020

File:

PDF, 285 KB

2020

3

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

Probst, Alexander J., Ladd, Bethany, Jarett, Jessica K., Geller-McGrath, David E., Sieber, Christian M. K., Emerson, Joanne B., Anantharaman, Karthik, Thomas, Brian C., Malmstrom, Rex R., Stieglmeier,

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 4.33 MB

english, 2018

4

Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics

Roux, Simon, Chan, Leong-Keat, Egan, Rob, Malmstrom, Rex R., McMahon, Katherine D., Sullivan, Matthew B.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.88 MB

english, 2017

5

SAR11 bacteria linked to ocean anoxia and nitrogen loss

Tsementzi, Despina, Wu, Jieying, Deutsch, Samuel, Nath, Sangeeta, Rodriguez-R, Luis M., Burns, Andrew S., Ranjan, Piyush, Sarode, Neha, Malmstrom, Rex R., Padilla, Cory C., Stone, Benjamin K., Bristow

Journal:

Year:

2016

Language:

english

File:

PDF, 4.99 MB

english, 2016

6

Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism

Price, Morgan N., Ray, Jayashree, Iavarone, Anthony T., Carlson, Hans K., Ryan, Elizabeth M., Malmstrom, Rex R., Arkin, Adam P., Deutschbauer, Adam M., Rabaey, Korneel

Journal:

Year:

2019

Language:

english

File:

PDF, 2.66 MB

english, 2019

7

Hidden diversity of soil giant viruses

Schulz, Frederik, Alteio, Lauren, Goudeau, Danielle, Ryan, Elizabeth M., Yu, Feiqiao B., Malmstrom, Rex R., Blanchard, Jeffrey, Woyke, Tanja

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.17 MB

english, 2018

8

The metabolic balance between autotrophy and heterotrophy in the western Arctic Ocean

Matthew T. Cottrell, Rex R. Malmstrom, Victoria Hill, Alex E. Parker, David L. Kirchman

Journal:

Deep Sea Research Part I: Oceanographic Research Papers

Year:

2006

Language:

english

File:

PDF, 283 KB

english, 2006

9

Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design

Sieradzki, Ella T., Koch, Benjamin J., Greenlon, Alex, Sachdeva, Rohan, Malmstrom, Rex R., Mau, Rebecca L., Blazewicz, Steven J., Firestone, Mary K., Hofmockel, Kirsten S., Schwartz, Egbert, Hungate,

Journal:

Year:

2020

File:

PDF, 532 KB

2020

10

Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean

Kirchman, David L., Elifantz, Hila, Dittel, Ana I., Malmstrom, Rex R., Cottrell, Matthew T.

Journal:

Limnology and Oceanography

Year:

2007

Language:

english

File:

PDF, 751 KB

english, 2007

11

Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics

Rinke, Christian, Lee, Janey, Nath, Nandita, Goudeau, Danielle, Thompson, Brian, Poulton, Nicole, Dmitrieff, Elizabeth, Malmstrom, Rex, Stepanauskas, Ramunas, Woyke, Tanja

Journal:

Nature Protocols

Year:

2014

Language:

english

File:

PDF, 839 KB

english, 2014

12

Freshwater carbon and nutrient cycles revealed through reconstructed population genomes

Linz, Alexandra M., He, Shaomei, Stevens, Sarah L.R., Anantharaman, Karthik, Rohwer, Robin R., Malmstrom, Rex R., Bertilsson, Stefan, McMahon, Katherine D.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

13

Advancing Genome-Resolved Metagenomics beyond the Shotgun

Malmstrom, Rex R., Eloe-Fadrosh, Emiley A.

Journal:

Year:

2019

Language:

english

File:

PDF, 153 KB

english, 2019

14

Novel copper-containing membrane monooxygenases (CuMMOs) encoded by alkane-utilizing Betaproteobacteria

Rochman, Fauziah F., Kwon, Miye, Khadka, Roshan, Tamas, Ivica, Lopez-Jauregui, Azriel Abraham, Sheremet, Andriy, V. Smirnova, Angela, Malmstrom, Rex R., Yoon, Sukhwan, Woyke, Tanja, Dunfield, Peter F.

Journal:

The ISME Journal

Year:

2019

File:

PDF, 1.22 MB

2019

15

Biogeography of Major Bacterial Groups in the Delaware Estuary

David L. Kirchman, Ana I. Dittel, Rex R. Malmstrom and Matthew T. Cottrell

Journal:

Limnology and Oceanography

Year:

2005

Language:

english

File:

PDF, 2.25 MB

english, 2005

16

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

Hamilton, Joshua J., Garcia, Sarahi L., Brown, Brittany S., Oyserman, Ben O., Moya-Flores, Francisco, Bertilsson, Stefan, Malmstrom, Rex R., Forest, Katrina T., McMahon, Katherine D., Pollard, Katheri

Journal:

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

17

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis

Malmstrom, Rex R, Rodrigue, Sébastien, Huang, Katherine H, Kelly, Libusha, Kern, Suzanne E, Thompson, Anne, Roggensack, Sara, Berube, Paul M, Henn, Matthew R, Chisholm, Sallie W

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 1.79 MB

english, 2013

18

Standing stocks, production, and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean

David L. Kirchman, Victoria Hill, Matthew T. Cottrell, Rolf Gradinger, Rex R. Malmstrom, Alexander Parker

Journal:

Deep Sea Research Part II: Topical Studies in Oceanography

Year:

2009

Language:

english

File:

PDF, 556 KB

english, 2009

19

Dimethylsulfoniopropionate (DMSP) Assimilation by Synechococcus in the Gulf of Mexico and Northwest Atlantic Ocean

Rex R. Malmstrom, Ronald P. Kiene, Maria Vila and David L. Kirchman

Journal:

Limnology and Oceanography

Year:

2005

Language:

english

File:

PDF, 508 KB

english, 2005

20

Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism

Price, Morgan N., Ray, Jayashree, Iavarone, Anthony T., Carlson, Hans K., Ryan, Elizabeth M., Malmstrom, Rex R., Arkin, Adam P., Deutschbauer, Adam M., Rabaey, Korneel

Journal:

Year:

2019

File:

PDF, 2.66 MB

2019

21

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

Malmstrom, Rex R, Coe, Allison, Kettler, Gregory C, Martiny, Adam C, Frias-Lopez, Jorge, Zinser, Erik R, Chisholm, Sallie W

Journal:

The ISME Journal

Year:

2010

Language:

english

File:

PDF, 1.13 MB

english, 2010

22

Standing Stocks and Activity of Archaea and Bacteria in the Western Arctic Ocean

David L. Kirchman, Hila Elifantz, Ana I. Dittel, Rex R. Malmstrom and Matthew T. Cottrell

Journal:

Limnology and Oceanography

Year:

2007

Language:

english

File:

PDF, 1.73 MB

english, 2007

23

Unlocking Short Read Sequencing for Metagenomics

Rodrigue, Sébastien, Materna, Arne C., Timberlake, Sonia C., Blackburn, Matthew C., Malmstrom, Rex R., Alm, Eric J., Chisholm, Sallie W., Gilbert, Jack Anthony

Journal:

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

24

Biogeography of major bacterial groups in the Delaware Estuary

Kirchman, David L., Dittel, Ana I., Malmstrom, Rex R., Cottrell, Matthew T.

Journal:

Limnology and Oceanography

Year:

2005

Language:

english

File:

PDF, 126 KB

english, 2005

25

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

Garcia, Sarahi L., Stevens, Sarah L. R., Crary, Benjamin, Martinez-Garcia, Manuel, Stepanauskas, Ramunas, Woyke, Tanja, Tringe, Susannah G., Andersson, Siv G. E., Bertilsson, Stefan, Malmstrom, Rex R.

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 1017 KB

english, 2017

26

Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico

Malmstrom, Rex R., Kiene, Ronald P., Kirchman, David L.

Journal:

Limnology and Oceanography

Year:

2004

Language:

english

File:

PDF, 363 KB

english, 2004

27

Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems

Holmfeldt, Karin, Solonenko, Natalie, Howard-Varona, Cristina, Moreno, Mario, Malmstrom, Rex R., Blow, Matthew J., Sullivan, Matthew B.

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

28

The Bacterial Symbiont Phaeobacter inhibens Shapes the Life History of Its Algal Host Emiliania huxleyi

Bramucci, Anna R., Labeeuw, Leen, Orata, Fabini D., Ryan, Elizabeth M., Malmstrom, Rex R., Case, Rebecca J.

Journal:

Frontiers in Marine Science

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

29

Control of bacterial growth by temperature and organic matter in the Western Arctic

David L. Kirchman, Rex R. Malmstrom, Matthew T. Cottrell

Journal:

Deep Sea Research Part II: Topical Studies in Oceanography

Year:

2005

Language:

english

File:

PDF, 248 KB

english, 2005

30

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

Jay McCarren, Jamie W. Becker, Daniel J. Repeta, Yanmei Shi, Curtis R. Young, Rex R. Malmstrom, Sallie W. Chisholm and Edward F. DeLong

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 2.30 MB

english, 2010

31

Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria

Ganesh, Sangita, Bertagnolli, Anthony D., Bristow, Laura A., Padilla, Cory C., Blackwood, Nigel, Aldunate, Montserrat, Bourbonnais, Annie, Altabet, Mark A., Malmstrom, Rex R., Woyke, Tanja, Ulloa, Osv

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

32

Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes

He, Shaomei, Stevens, Sarah L. R., Chan, Leong-Keat, Bertilsson, Stefan, Glavina del Rio, Tijana, Tringe, Susannah G., Malmstrom, Rex R., McMahon, Katherine D., Hallam, Steven J.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

33

A pipeline for targeted metagenomics of environmental bacteria

Grieb, Anissa, Bowers, Robert M., Oggerin, Monike, Goudeau, Danielle, Lee, Janey, Malmstrom, Rex R., Woyke, Tanja, Fuchs, Bernhard M.

Journal:

Year:

2020

File:

PDF, 2.41 MB

2020

34

Dimethylsulfoniopropionate (DMSP) assimilation by Synechococcus in the Gulf of Mexico and northwest Atlantic Ocean

Malmstrom, Rex R., Kiene, Ronald P., Vila, Maria, Kirchman, David L.

Journal:

Limnology and Oceanography

Year:

2005

Language:

english

File:

PDF, 338 KB

english, 2005

35

Identification and Enumeration of Bacteria Assimilating Dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico

Rex R. Malmstrom, Ronald P. Kiene and David L. Kirchman

Journal:

Limnology and Oceanography

Year:

2004

Language:

english

File:

PDF, 1.87 MB

english, 2004

36

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia

Hatzenpichler, Roland, Connon, Stephanie A., Goudeau, Danielle, Malmstrom, Rex R., Woyke, Tanja, Orphan, Victoria J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.56 MB

english, 2016

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